DOWNLOAD AND INSTALLATION

A source package can be downloaded for

MAC OSX and Linux
Windows

INSTALLING THE SOURCE PACKAGE

In order to install the source package on a personal machine or a server use the following command

R CMD INSTALL RegFacEnc_xyz.tar.gz 

or to Install in a local directory on a server or on a personal machine use:

R CMD INSTALL RegFacEnc_xyz.tar.gz -l /home/path….

NOTE: Window users must download R tools to install a source package.

R STUDIO

  1. Unzip the source package.
  2. Using R Studio Create new project in the unzipped package directory.
  3. Using the build tab under more select Clean and Rebuild

The current version of RegFacEnc will only work with R version 3.0.0 or higher. The RegFacEnc is dependent on the following R Packages. Please make sure these dependencies are installed on your machine before using RegFacEnc

library(Biostrings)
library(Cairo)
library(gplots)
library(hwriter)
library(igraph)
library(MEET)
library(plyr)
library(seqinr)
library(seqLogo)

source("http://bioconductor.org/biocLite.R")
biocLite(c("Biostrings", "Cairo", "gplots", "hwriter", "igraph", "MEET", "plyr", "seqinr", "seqLogo"))